Kyoto

The club was started as Kyoto Shiko Club, one of the few proper Japanese football clubs in the sense of being strictly dedicated to football and not being part of a company. Like Ventforet Kofu, it could not rise to a Japan Soccer League First Division dominated by company teams; in 1993, after the J.League was created, Kyoto Shiko Club, aided by funds from local new sponsors Kyocera and Nintendo, professionalized (though some players broke away and formed their own clubs, see below) and joined the former Japan Football League under the new name Kyoto Purple Sanga.

First joining the J.League in 1996, Kyoto Purple Sanga hold the dubious distinction of being the League's most relegated side, having been demoted on three occasions. Relegation to J2 League occurred at the end of the 2000, 2003 and 2006 seasons; more than any other team. The 2003 relegation happened despite having many national team players such as Park Ji-sung and Daisuke Matsui on its roster, and they eventually left for European clubs.

In December 2007, Sanga gained J1 League status for the fourth time in their history via the promotion/relegation playoff and therefore shorten its club name to Kyoto Sanga. A 0–2 home defeat to Urawa Reds on 14 November 2010 confirmed Sanga's relegation back to J2, bringing an end to their three-season spell in the top flight.

In the 2021 season, Sanga returned to J1 League after an 11-year absence and finished as runner-up. In 2022, Kyoto Sanga remained in J1 League after draw 1–1 against Roasso Kumamoto in Promotion Relegation play-offs.

AFC Champions League Elite debut

In the 2025 season, Sanga achieved their highest league placement ever finishing third in J1 League thus seeing the club qualifying to the 2026–27 AFC Champions League Elite campaign which is their first continental tournament.